Human-to-dog transmission of SARS-CoV-2, Colombia.

Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), the causative agent of the current COVID-19 pandemic, has evolved to have a wide range of hosts, including non-human primates, wild and domestic animals. The ACE2 protein has a high level of conservation and is the common receptor invertebrate species for a viral infection to occur; this receptor could give rise to anthroponotic events. This article describes the first event of symptomatic transmission in Latin America from a human to a dog by the B.1.625 lineage of SARS-CoV-2. We found 21 shared mutations in the complete genomes of viral sequences from owners and dogs. Further phylogenetic and molecular analysis showed that 100% co-localization of the clade helps to understand human-animal transmission. Prediction of the Spike protein structure of the sequenced virus and docking analyzes showed that the E484K mutation in the receptor-binding domain (RBD) could contribute to the viral affinity of dACE2. Therefore, close contact between SARS-CoV-2-infected humans and pets should be avoided to prevent the emergence of novel mutations of public health importance from anthroponotic events.

SARS-CoV-2 in eight municipalities of the Colombian tropics: high immunity, clinical and sociodemographic outcomes.

BACKGROUND: Serological evaluation of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is an alternative that allows us to determine the prevalence and dynamics of this infection in populations. The goal of this study was to determine the clinical and sociodemographic dynamics of SARS-CoV-2 infection in a region of the Colombian Caribbean. METHODS: Between July and November 2020, a cross-sectional observational study was carried out in Córdoba, located in northeast Colombia in the Caribbean area. Eight municipalities with the largest populations were chosen and 2564 blood samples were taken. A commercial enzyme-linked immunosorbent assay was used with the recombinant protein antigen N of SARS-CoV-2. The people included in the study were asked for sociodemographic and clinical data, which were analysed by statistical methods. RESULTS: A seroprevalence of 40.8% was obtained for SARS-CoV-2 in the Córdoba region. In the bivariate analysis, no differences were observed in seropositivity against SARS-CoV-2 for gender or age range (p>0.05). Higher seropositivity was found in low socio-economic status and symptomatic patients (p<0.0001). A total of 30.7% of the asymptomatic patients were seropositive for SARS-CoV-2, which could be linked to the spread of this infection. In the multivariate analysis, seroconversion was related to poverty and clinical manifestations such as anosmia and ageusia (p<0.05). CONCLUSIONS: The high seropositivity in Córdoba is due to widespread SARS-CoV-2 in this population. The relationship between seropositivity and socio-economic status suggests a higher exposure risk to the virus caused by informal economic activities in low-income groups. Clinical manifestations such as anosmia and ageusia could be clinical predictors of infection by the new emergent coronavirus.

Bats are an excellent sentinel model for the detection of genotoxic agents. Study in a Colombian Caribbean region.

Wildlife animals have been affected by human activities and the diminution of the areas needed to develop wildlife. In Colombia, artisanal and industrial mining focuses on gold extraction, which uses mercury and causes contamination in water sources. Bats may be susceptible to chemical contamination and primarily to bioaccumulated heavy metal contaminants in the food chain. The primary source of exposure is contaminated food and water ingest, followed by dermic exposition and inhalation. The objective was to evaluategenotoxic damage and mercury concentration in bats. Forty-five samples of blood and organs of bats captured in Ayapel and Majagual were collected. Erythrocytes were searched for micronuclei by peripheral blood smear. Mercury concentration in 45 liver and spleen samples was determined by atomic absorption spectroscopy (DMA80 TRICELL, Milestone Inc, Italy). Bats from four families were studied: Phyllostomidae (6 species), Molossidae (3 species), Vespertilionidae (1 species), and Emballonuridae (1 species). Mercury was found in all bat species from the different dietary guilds. Insectivores had the highest concentration of mercury in the liver (0,23 µg/g) and spleen (0,25 µg/g) and the highest number of micronuclei (260 micronuclei/10,000). The specimens captured in Majagual had the highest frequency of micronuclei (677 micronuclei/10,000), and those captured in Ayapel had the highest mercury concentration (0,833 µg/g). This is the first study in Colombia to report that bats could act as sentinels to the environment's genotoxic chemical agents. Mercury and a high frequency of micronuclei were found in the tissues of captured bats. In addition to mercury contamination, there could also be other contaminants affecting Chiroptera.

Epidemiological and viral features of a cohort of SARS-CoV-2 symptomatic and asymptomatic individuals in an area of the Colombian Caribbean.

BACKGROUND: Severe acute respiratory syndrome Coronavirus 2 (SARS-CoV-2) is an emerging viral pandemic disease. In the last 6 months, SARS-CoV-2 has caused millions of reported cases and hundreds of thousands of deaths. As other world regions, South America has not contained the pandemic's advance since it lacks the hospital and economic capacities. Public health implications of transmission, while the asymptomatic/presymptomatic infection is a critical concern at the current pandemic. OBJECTIVE: Describe the socio-demographic, clinical, and viral features of a cohort of SARS-CoV-2 infected individuals from the Colombian Caribbean. METHODS: Six hundred eighty-six clinical samples of suspected SARS-CoV-2 infection cases and contacts individuals from several hospital centers in the department of Córdoba, Colombia, were received at our laboratory between April 9th and May 16th, 2020. RNA was extracted using lysis buffers and spin columns. The samples were tested for SARS-CoV-2 by reverse transcription real-time polymerase chain reaction (RT-qPCR) using commercially available multiplex real-time PCR assay for simultaneous detection of 3 target genes of SARS-CoV-2 (Allplex™, 2019-nCoV assay, Korea). Viral copies quantification was done using a standard curve constructed from seriated dilutions of a SARS-CoV-2 positive control. Statics descriptive methods were used. RESULTS: Thirty-five nasopharyngeal samples were positive for SARS-CoV-2 infection; the average age was 43 (range, 1-95 years). Seventeen of 35 (49%) of the patients showed symptoms. Most of them had a cough, fever, and odynophagia; three of the patients reported having arthralgia. Only two patients required hospitalization. None of the patients had known co-morbidities. RT-qPCR results show that two of the symptomatic patients had significantly higher RNA copies than the rest. Eighteen of 35 (51%) individuals were asymptomatic, and the average age was 30 (range, 6-61 years). Four asymptomatic individuals showed a higher copy than some symptomatic patients; nonetheless, the average of RNA copies 8.26 × 1010 was lower than the symptomatic. CONCLUSIONS: This study shows that asymptomatic patients may develop infections with a high number of RNA copies. Since a considerable percentage of infections may be asymptomatic/presymptomatic, enhanced testing approaches may be needed to detect these persons. Due the occurrence of a large proportion of infections being a result from transmission originated in asymptomatic/presymptomatic individuals, public health interventions in Colombia should be based on two steps: a massive molecular screening, and viral load quantification. Finally, a remarkable issue in our study is the average age of symptomatic and asymptomatic groups (43 and 30 respectively) which may be important because of the economic impact that has been caused by the coronavirus pandemic and may be probably the cause of the reduced lethality observed in the country and the department at the time of this study.

Composición y estructura del ensamblaje de hormigas en diferentes usos del suelo en Santa Fe de Antioquia, Colombia / Ant assemblage composition and structure in different land uses in Santa Fe de Antioquia, Colombia

RESUMEN La Estación Agraria Cotové está ubicada en Santa Fe de Antioquia, zona de bosque seco tropical, en la que se han desarrollado actividades agropecuarias por más de 40 años, transformado sus ecosistemas originales y modificando las condiciones ambientales. Por lo anterior, este estudio tiene por objetivo evaluar la composición y la estructura de las hormigas en cinco sitios, con diferentes usos del suelo de la Estación Agraria: frutales, sistema silvopastoril, bosque secundario, pastos de corte y pastoreo con baja densidad de árboles. En cada uso del suelo, se ubicaron tres transectos de 100m cada uno, al interior, interior-borde y borde, tomando una muestra cada 20m, a una profundidad de 10cm. Se identificaron las hormigas presentes, a nivel de morfoespecies y se clasificaron por gremios tróficos y por grupos funcionales. Se recolectaron 5.239 individuos, agrupados en 253 colonias, pertenecientes a 23 géneros y 37 morfoespecies de las subfamilias Myrmicinae, Ponerinae, Formicinae y Ecitoninae. La diversidad fue más alta en bosque secundario y frutales, mientras que la dominancia fue mayor en el sistema silvopastoril y en pastoreo con baja densidad de árboles. Entre bosque secundario y frutales, se encontró el mayor valor de morfoespecies compartidas. Los gremios tróficos mejor representados fueron omnívoros y depredadores y, por grupo funcional, se presentó una mayor proporción de Especialistas de Clima Tropical y de Myrmicinae Generalistas.

ABSTRACT The Agrarian Station Cotové is located in Santa Fe de Antioquia, an area of tropical dry forest in which agricultural activities have been carried out for more than 40 years, which have transformed their original ecosystems and modified the environmental conditions. Therefore, this study aims to evaluate the composition and structure of ants in five sites with different land uses: fruit trees, silvopasture, secondary forest, grass for cutting, and pastures with low density of trees. In each land use, three transects of 100m each were located, inside, inside-edge, and edge, taking a sample every 20m to a depth of 10cm. In each site, the ants were identified to morphospecies, and classified by trophic guilds and by functional groups. The diversity index for each land uses were determined. We collected 5239 ants, grouped in 253 colonies, belonging to 23 genera and 37 morphospecies of subfamilies Myrmicinae, Ponerinae, Formicinae y Ecitoninae. Species diversity was highest in secondary forest and fruit trees, while the dominance was higher in silvopasture and pastures with low density of trees. Secondary forest and fruit trees showed the highest value of shared morphospecies. The omnivorous and predator's trophic guilds were the best represented, and regarding functional groups, we found a high proportion of tropical climate specialists and Myrmicinae generalists.

Histopatología de órganos y lesiones en hicoteas Trachemys callirostris callirostris (Gray, 1856) mantenidas en cautiverio en Córdoba, Colombia / Histopathology of organs and lesions in captive Colombian slider turtles (Trachemys callirostris callirostris) from Cordoba, Colombia / Histopatologia de órgãos e lesões em tartarugas icoteas Trachemys callirostris callirostris (Gray, 1856) em Córdoba, Colômbia

Resumen Se hizo una evaluación posmortem de 41 individuos de T. callirostris, mantenidos en cautiverio durante el 2009 en el Centro de Atención de Fauna (CAV-CVS), a través de exámenes histopatológicos de los principales órganos y lesiones encontradas. Para esto se realizó un examen clínico externo de los individuos y se evaluó cada uno de los órganos macroscópicamente. Los órganos que presentaron anomalías fueron colectados para histopatología con la tinción Hematoxilina-Eosina. De los individuos evaluados, el principal hallazgo patológico externo correspondió a la enfermedad septicémica ulcerativa cutánea (SCUD), el cual se presentó en el 90% de los individuos. A la evaluación macroscópica de los órganos internos, se observaron anomalías en la cavidad celómica, hígado, bazo y pulmones. Se presentaron lesiones en el 71% de los hígados, 92% de los bazos, 41% de los riñones y 40% de los pulmones. Lo anterior demuestra el efecto negativo que tiene el cautiverio sobre los individuos silvestres de esta especie que han sido decomisados producto del tráfico ilegal.

A postmortem evaluation of 41 T. callirostris kept in captivity during the year 2009 was conducted at CAV-CVS Wildlife Care Center. The evaluation was performed in animals confiscated as a result of illegal trafficking. Histopathological examination of main organs and lesions was conducted in all animals. External clinical examination was also conducted and organs were macroscopically evaluated. Organs with anomalies were collected for histopathology and stained with hematoxylin-eosin stain. The most common external pathology found was Septicemic Cutaneous Ulcerative Disease (SCUD), present in 90% of the individuals. Abnormalities in the coelomic cavity, liver, spleen and lungs were observed while performing the macroscopic evaluation of internal organs. Lesions were present in 71% of livers, 92% of spleens, 41% of kidneys, and 40% of the lungs. This study shows the negative effects of captivity on wild individuals of this species.

Avaliou-se o estado sanitário post-mortem de 41 indivíduos de T.callirostris, mantidos em cativeiro durante o 2009 no centro de atenção de fauna Silvestre (CAV-CVS). A avaliação se fez a traves de analise histopatológica dos principais órgãos e lesões encontradas. Para isto, realizou-se uma avaliação clinica externa dos indivíduos e avaliaram-se cada um dos órgãos macroscopicamente. Os órgãos que apresentaram anomalias foram coletados para histopatologia com Hematoxilina-Eosina. Dos indivíduos avaliados, a principal descoberta no exame patológico externo correspondeu a doença septicêmica ulcerativa cutânea (SCUD), o qual apresentou-se no 90% dos indivíduos (37/41). Na avaliação macroscópica dos órgãos internos, observaram-se anomalias na cavidade celômica, fígado, baço e pulmões. Apresentaram-se lesões no 71% dos fígados, 92% dos baços, 41% dos rins e 40% dos pulmões. O anterior demonstra o efeito negativo que tem o cativeiro sob os indivíduos silvestres desta espécie que tem sido decomisados como produto do trafego ilegal.

Diversidad de aves en el Centro Agropecuario Cotové, Santa Fe de Antioquia, Colombia / Diversity of birds in Cotové Agricultural Center, Santa Fe de Antioquia, Colombia

Fragmentation of natural habitats is a central concern of biodiversity conservation and is considered a significant factor contributing to species loss and populations decline. We studied this in Cotové Agricultural Center in the municipality of Santa Fe de Antioquia (Colombia),where the conversion of natural forests to different land use systems, has limited the amount of available habitat. With the aim to describe the effect of habitat loss on bird presence in five land uses (fruiting trees, silvopastoral systems, secondary forest, pasture low density of trees and grass cutting) in this area, we studied bird diversity using two methods: fixed point counts and mist nets to analyze the influence of land use in the composition, richness and abundance of birds present were studied. A total of 6 633 individuals of 101 species were observed of which 11 species were migratory. The insectivorous and frugivorous foraging guilds were better represented. The Shannon index indicated the highest values of alpha diversity for the silvopastoral system, and the fruit with the lowest. The grazing and silvopastoral land systems shared more species with low tree density. The importance of the environmental heterogeneity found is highlighted as a positive factor for bird species richness, mostly of low and middle habitat specificity, and preferably from edge habitats and open areas. In order to preserve natural regeneration and connectivity between different land use types, and to promote stability of bird species populations, some management actions should be implemented in the area.

En el Centro Agropecuario Cotové, en el municipio de Santa Fe de Antioquia (Colombia), se estudió la diversidad de aves utilizando las metodologías de puntos fijos de conteo y redes de niebla en cinco usos del suelo (Frutales, Sistema silvopastoril, Bosque secundario, Pastoreo con baja densidad de árboles y Pastos de corte), para analizar la influencia sobre la composición, riqueza y abundancia de la avifauna. Se registraron 6 633 individuos de 101 especies, de las cuales 11 especies son migratorias. En términos de abundancia, la mayoría de las especies fueron raras y pocas comunes. Los gremios alimenticios mejor representados fueron insectívoros y frugívoros. El índice de Shannon indica que el Sistema silvopastoril presenta los valores de diversidad alfa más altos y los frutales los más bajos. Los usos del suelo que compartieron más especies fueron sistema Silvopastoril y Pastoreo con baja densidad de árboles. La heterogeneidad ambiental del centro actúa de forma diferente para las especies, beneficia en su mayoría aves de baja y media especificidad de hábitat, y con preferencia de hábitats de borde y áreas abiertas, por lo que se deben implementar acciones de manejo dirigidas a la conservación de áreas de regeneración natural y conectividad entre usos del suelo, para que las poblaciones de especies de aves presentes en la zona puedan ser mantenidas en el tiempo.

[Diversity of birds in the Agricultural Center Cotové, Santa Fe de Antioquia, Colombia]. / Diversidad de aves en el Centro Agropecuario Cotové, Santa Fe de Antioquia, Colombia.

Fragmentation of natural habitats is a central concern of biodiversity conservation and is considered a significant factor contributing to species loss and populations decline. We studied this in Cotové Agricultural Center in the municipality of Santa Fe de Antioquia (Colombia),where the conversion of natural forests to different land use systems, has limited the amount of available habitat. With the aim to describe the effect of habitat loss on bird presence in five land uses (fruiting trees, silvopastoral systems, secondary forest, pasture low density of trees and grass cutting) in this area, we studied bird diversity using two methods: fixed point counts and mist nets to analyze the influence of land use in the composition, richness and abundance of birds present were studied. A total of 6633 individuals of 101 species were observed of which 11 species were migratory. The insectivorous and frugivorous foraging guilds were better represented. The Shannon index indicated the highest values of alpha diversity for the silvopastoral system, and the fruit with the lowest. The grazing and silvopastoral land systems shared more species with low tree density. The importance of the environmental heterogeneity found is highlighted as a positive factor for bird species richness, mostly of low and middle habitat specificity, and preferably from edge habitats and open areas. In order to preserve natural regeneration and connectivity between different land use types, and to promote stability of bird species populations, some management actions should be implemented in the area.